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DNA Traits · Skin & sun

Ease of tanning (IRF4)

How easily skin tans in the sun.

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Evidence · Replicated

What the research found

In the cited research, the T allele at rs12203592 was associated with lower self-reported ease of skin tanning in the studied cohorts.

CC
Tans more
CT
Middle
TT
Tans less
Modest effect

What the study found

In the study, each copy went with ease of suntan on a four step scale from never to strongly about 0.23 points lower on average.

Spanish (Catalan) GCAT cohort participants of European ancestry · 4,973 people · Supplementary Table S6 (Ease suntan block, rs12203592 row) and Supplementary Table S1 (coding and sample size)Skin Phototype and Disease: A Comprehensive Genetic Approach to Pigmentary Traits Pleiotropy Using PRS in the GCAT Cohort (Farre et al., 2023)
Evidence
Genome-wide association with independent replication
Who was studied
European ancestry (UK Biobank with five replication cohorts, the Spanish GCAT cohort, and US nurses and health professionals)
1000 Genomes Project

How common each genotype is

How common each genotype is in the 1000 Genomes Project, by region
RegionCCTans moreCTMiddleTTTans less
All regions2,504 people93%6%<1%
Africa661 people98%1%<1%
The Americas347 people86%13%<1%
East Asia504 peopleAllNot seenNot seen
Europe503 people79%20%2%
South Asia489 people99%1%Not seen

Among the 2,504 people of the 1000 Genomes Project, in five world regions. These percentages describe groups of people, never anyone’s chance of having a trait.

Ancient genomes

Through time

How often the studied letter was read in ancient people, era by era, in the region chosen.

Region
Through time: Europe
Before farmingbefore 6500 BC46%26 of 56 copies read
First farmers6500 to 3000 BC13%114 of 868 copies read
Bronze Age3000 to 1200 BC14%100 of 728 copies read
Iron Age and Antiquity1200 BC to AD 60012%124 of 1,018 copies read
Middle AgesAD 600 to 15007%36 of 552 copies read
Today1000 Genomes12%117 of 1,006 copies

Neanderthal and Denisovan genomes

Altai Neanderthal
No copies
Vindija Neanderthal
No copies
Chagyrskaya Neanderthal
No copies
Denisovan
No copies

Neanderthals and Denisovans carried the other letter, so this letter is younger than our split with them.

For most ancient people only one of their two copies can be read, so these counts are copies read, not people. Close relatives, repeated samples and samples the archive marks as unreliable are left out. Damage in old DNA can fake this letter, so it is counted only from samples treated to remove that damage and from high-quality genomes. Ancient genomes from the Allen Ancient DNA Resource (AADR v66): 15,136 people.
rs12203592

The marker

Gene or region
IRF4
Marker
rs12203592
Location
Chromosome 6 · GRCh37 396,321 · GRCh38 396,321
Letters studied
C and T, with T as the studied allele

A DNA Traits report reads this marker in your raw DNA file and shows which of the three genotypes is yours, with how common it is. It counts the copies of the studied allele; it does not measure the trait itself.

Marker
IRF4 · rs12203592
Location
Chromosome 6 · GRCh37 396,321 · GRCh38 396,321
Studied allele
T
Published statistic
GCAT: beta -0.226 (SE 0.025) per T allele on the zero to three ease of suntan scale, P 8.22e-20, n 4,973 (Farre 2023 Supplementary Table S6); UK Biobank: OR 1.74 (1.69 to 1.76) per T for low tan response, P 1.05e-581, n 121,296, with replication meta-analysis P 4.40e-157 in 55,382 Europeans (Visconti 2018 Table 1); US nurses and health professionals: tanning ability beta -0.35 (SE 0.03) per T, P 3.3e-23 (Zhang 2013 Table 6) (Supplementary Table S6 (Ease suntan block, rs12203592 row) and Supplementary Table S1 (coding and sample size))
1000 Genomes Project phase 3, people with 0, 1 and 2 copies
All regions 2332 / 160 / 12 · Africa 651 / 9 / 1 · The Americas 299 / 46 / 2 · East Asia 504 / 0 / 0 · Europe 395 / 99 / 9 · South Asia 483 / 6 / 0
See this card in the sample report
Limits

What it cannot tell you

The same IRF4 marker as the freckling and hair greying cards, so these cards are not independent evidence.

Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure (Visconti et al., 2018)
The same topic

More in Skin & sun

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