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DNA Traits · Immune biology

Monocyte count association

The number of monocytes, a type of white blood cell, in the blood.

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Evidence · Replicated

What the research found

In the cited research, the T allele at rs1449263 was associated with higher monocyte counts in the studied cohorts.

CC
Lower average
CT
Middle
TT
Higher average
Evidence
Genome-wide association with independent replication
Who was studied
European-ancestry discovery and independent replication cohorts
1000 Genomes Project

How common each genotype is

How common each genotype is in the 1000 Genomes Project, by region
RegionCCLower averageCTMiddleTTHigher average
All regions2,504 people23%46%30%
Africa661 people15%48%36%
The Americas347 people24%48%29%
East Asia504 people42%42%16%
Europe503 people22%49%29%
South Asia489 people16%45%40%

Among the 2,504 people of the 1000 Genomes Project, in five world regions. These percentages describe groups of people, never anyone’s chance of having a trait.

Ancient genomes

Through time

How often the studied letter was read in ancient people, era by era, in the region chosen.

Region
Through time: Europe
Before farmingbefore 6500 BC35%19 of 54 copies read
First farmers6500 to 3000 BC50%360 of 714 copies read
Bronze Age3000 to 1200 BC55%329 of 601 copies read
Iron Age and Antiquity1200 BC to AD 60051%429 of 847 copies read
Middle AgesAD 600 to 150048%263 of 544 copies read
Today1000 Genomes54%540 of 1,006 copies

Neanderthal and Denisovan genomes

Altai Neanderthal
No copies
Vindija Neanderthal
No copies
Chagyrskaya Neanderthal
No copies
Denisovan
No copies

Neanderthals and Denisovans carried the other letter, so this letter is younger than our split with them.

For most ancient people only one of their two copies can be read, so these counts are copies read, not people. Close relatives, repeated samples and samples the archive marks as unreliable are left out. Damage in old DNA can fake this letter, so it is counted only from samples treated to remove that damage and from high-quality genomes. Ancient genomes from the Allen Ancient DNA Resource (AADR v66): 15,136 people.
rs1449263

The marker

Gene or region
ITGA4 region
Marker
rs1449263
Location
Chromosome 2 · GRCh37 182,319,301 · GRCh38 181,454,574
Letters studied
C and T, with T as the studied allele

A DNA Traits report reads this marker in your raw DNA file and shows which of the three genotypes is yours, with how common it is. It counts the copies of the studied allele; it does not measure the trait itself.

Marker
ITGA4 region · rs1449263
Location
Chromosome 2 · GRCh37 182,319,301 · GRCh38 181,454,574
Studied allele
T
Published statistic
Joint beta +0.036 per T allele on natural-log monocyte count (SE 0.004), P 5.21e-23; discovery +0.036 (SE 0.005), P 6.71e-14; independent replication +0.037 (SE 0.006), P 2.13e-10 (Table 2) (Table 2, monocyte count row; Methods (transformation))
1000 Genomes Project phase 3, people with 0, 1 and 2 copies
All regions 584 / 1157 / 763 · Africa 101 / 320 / 240 · The Americas 82 / 165 / 100 · East Asia 214 / 210 / 80 · Europe 111 / 244 / 148 · South Asia 76 / 218 / 195
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Limits

What it cannot tell you

This small association is with a laboratory blood-cell count within the normal range studied. It does not estimate your current count, grade immune strength or predict infection, allergy, autoimmune disease or blood cancer. Only the studied C/T allele pair is interpreted.

Multiple Loci Are Associated with White Blood Cell Phenotypes (Nalls et al., 2011)
The same topic

More in Immune biology

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