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DNA Traits · Immune biology

Total IgE concentration association

The blood level of IgE, the antibody involved in allergic reactions.

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Evidence · Replicated

What the research found

In the cited research, the C allele at rs2251746 was associated with lower total serum IgE concentrations in the studied cohorts.

TT
Higher average
CT
Middle
CC
Lower average

What the study found

In the study, each copy went with total IgE in blood about 19.2% lower on average.

German adults and children in four population-based replication cohorts (KORA S4, GINI, LISA, ISAAC) · 9,769 people · Table 1, rs2251746 row, Combined columns (Est. %); Methods (percent-change model)
Evidence
Genome-wide association with independent replication
Who was studied
German population cohorts of adults and children
1000 Genomes Project

How common each genotype is

How common each genotype is in the 1000 Genomes Project, by region
RegionTTHigher averageCTMiddleCCLower average
All regions2,504 people74%22%4%
Africa661 people91%9%<1%
The Americas347 people74%24%3%
East Asia504 people91%9%<1%
Europe503 people50%40%10%
South Asia489 people58%33%9%

Among the 2,504 people of the 1000 Genomes Project, in five world regions. These percentages describe groups of people, never anyone’s chance of having a trait.

Ancient genomes

Through time

How often the studied letter was read in ancient people, era by era, in the region chosen.

Region
Through time: Europe
Before farmingbefore 6500 BC45%17 of 38 copies read
First farmers6500 to 3000 BC26%114 of 441 copies read
Bronze Age3000 to 1200 BC31%98 of 316 copies read
Iron Age and Antiquity1200 BC to AD 60025%109 of 435 copies read
Middle AgesAD 600 to 150027%98 of 369 copies read
Today1000 Genomes30%298 of 1,006 copies

Neanderthal and Denisovan genomes

Altai Neanderthal
No copies
Vindija Neanderthal
No copies
Chagyrskaya Neanderthal
No copies
Denisovan
No copies

Neanderthals and Denisovans carried the other letter, so this letter is younger than our split with them.

For most ancient people only one of their two copies can be read, so these counts are copies read, not people. Close relatives, repeated samples and samples the archive marks as unreliable are left out. Damage in old DNA can fake this letter, so it is counted only from samples treated to remove that damage and from high-quality genomes. Ancient genomes from the Allen Ancient DNA Resource (AADR v66): 15,136 people.
rs2251746

The marker

Gene or region
FCER1A
Marker
rs2251746
Location
Chromosome 1 · GRCh37 159,272,060 · GRCh38 159,302,270
Letters studied
C and T, with C as the studied allele

A DNA Traits report reads this marker in your raw DNA file and shows which of the three genotypes is yours, with how common it is. It counts the copies of the studied allele; it does not measure the trait itself.

Marker
FCER1A · rs2251746
Location
Chromosome 1 · GRCh37 159,272,060 · GRCh38 159,302,270
Studied allele
C
Published statistic
Combined replication beta -0.213 per C allele on log IgE, P 1.85e-20, -19.21% per C allele, N 9,769; KORA S4 -0.227 (P 6.07e-10), GINI -0.236 (P 8.14e-6), LISA -0.290 (P 4.18e-5), ISAAC -0.153 (P 2.11e-4) (Table 1). Framingham: minor C beta -0.084 on log10 IgE, P 2.11e-12 (PMC3293994, Table 2) (Table 1, rs2251746 row, Combined columns (Est. %); Methods (percent-change model))
1000 Genomes Project phase 3, people with 0, 1 and 2 copies
All regions 1858 / 545 / 101 · Africa 603 / 57 / 1 · The Americas 256 / 82 / 9 · East Asia 460 / 43 / 1 · Europe 253 / 202 / 48 · South Asia 286 / 161 / 42
See this card in the sample report
Limits

What it cannot tell you

The association concerns total IgE measured in blood. It does not estimate your current IgE, identify an allergen, test for allergy or asthma, or indicate whether your immune system is stronger or weaker. Only the studied C/T allele pair is interpreted.

Genome-Wide Scan on Total Serum IgE Levels Identifies FCER1A as Novel Susceptibility Locus (Weidinger et al., 2008)
The same topic

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