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DNA Traits · Reproductive biology

Natural menopause timing association

The age at which periods stop naturally.

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Evidence · Replicated

What the research found

In the cited research, the A allele at rs16991615 was associated with later age at natural menopause in studied women.

GG
Earlier
AG
Middle
AA
Later
Modest effect

What the study found

In the study, each copy went with age at natural menopause about 0.9 years higher on average.

Women of European descent with natural menopause between 40 and 60, in 21 replication studies · Table 1, rs16991615 replication rowMeta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways (Stolk et al., 2012)
Evidence
Replicated genome-wide association with a coding variant
Who was studied
European-ancestry cohorts, with replication in Hispanic women

The research behind this card was done only in women, so it is part of a report requested as female.

1000 Genomes Project

How common each genotype is

How common each genotype is in the 1000 Genomes Project, by region
RegionGGEarlierAGMiddleAALater
All regions2,504 people95%5%<1%
Africa661 people>99%<1%Not seen
The Americas347 people89%11%Not seen
East Asia504 peopleAllNot seenNot seen
Europe503 people87%12%<1%
South Asia489 people95%4%<1%

Among the 2,504 people of the 1000 Genomes Project, in five world regions. These percentages describe groups of people, never anyone’s chance of having a trait.

Ancient genomes

Through time

How often the studied letter was read in ancient people, era by era, in the region chosen.

Region
Through time: Europe
Before farmingbefore 6500 BC0%0 of 54 copies read
First farmers6500 to 3000 BC10%65 of 672 copies read
Bronze Age3000 to 1200 BC11%60 of 552 copies read
Iron Age and Antiquity1200 BC to AD 6009%68 of 724 copies read
Middle AgesAD 600 to 15008%35 of 462 copies read
Today1000 Genomes7%67 of 1,006 copies

Neanderthal and Denisovan genomes

Altai Neanderthal
No copies
Vindija Neanderthal
No copies
Chagyrskaya Neanderthal
No copies
Denisovan
No copies

Neanderthals and Denisovans carried the other letter, so this letter is younger than our split with them.

For most ancient people only one of their two copies can be read, so these counts are copies read, not people. Close relatives, repeated samples and samples the archive marks as unreliable are left out. Damage in old DNA can fake this letter, so it is counted only from samples treated to remove that damage and from high-quality genomes. Ancient genomes from the Allen Ancient DNA Resource (AADR v66): 15,136 people.
rs16991615

The marker

Gene or region
MCM8
Marker
rs16991615
Location
Chromosome 20 · GRCh37 5,948,227 · GRCh38 5,967,581
Letters studied
A and G, with A as the studied allele

A DNA Traits report reads this marker in your raw DNA file and shows which of the three genotypes is yours, with how common it is. It counts the copies of the studied allele; it does not measure the trait itself.

Marker
MCM8 · rs16991615
Location
Chromosome 20 · GRCh37 5,948,227 · GRCh38 5,967,581
Studied allele
A
Published statistic
Replication beta +0.896 years per A allele (SE 0.096), P 7.90e-21; discovery +0.971 (SE 0.062), P 1.16e-54; combined +0.948 (SE 0.052), P 1.42e-73 (Stolk 2012 Table 1). Catalog source He 2009 Table 1: joint +1.07 years per A allele (SE 0.11), P 1.2e-21 (Table 1, rs16991615 replication row)
1000 Genomes Project phase 3, people with 0, 1 and 2 copies
All regions 2376 / 123 / 5 · Africa 659 / 2 / 0 · The Americas 308 / 39 / 0 · East Asia 504 / 0 / 0 · Europe 439 / 61 / 3 · South Asia 466 / 21 / 2
See this card in the sample report
Limits

What it cannot tell you

This common-variant association does not predict your menopause age, measure ovarian reserve, count remaining eggs or show how long you can conceive. It is not a test for premature ovarian insufficiency and should not guide pregnancy planning. The study concerned natural menopause rather than menopause after surgery or treatment.

Genome-wide association studies identify loci associated with age at menarche and age at natural menopause (He et al., 2009)
The same topic

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