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DNA Traits · Sleep & rhythms

Daytime napping (TLE4)

How often people nap during the day.

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Evidence · Replicated

What the research found

In the cited research, the C allele at rs13284688 was associated with more frequent self-reported daytime napping in the studied cohorts.

TT
Less often
CT
Middle
CC
More often
Slight effect

What the study found

In the study, each copy went with how often people nap, on a three-step scale from never or rarely to usually about 0.01 points higher on average.

UK Biobank and 23andMe research participants of European ancestry · 993,966 people · Supplementary Data 2
Evidence
Genome-wide association in UK Biobank with independent replication in 23andMe
Who was studied
UK Biobank and 23andMe research participants of European ancestry
1000 Genomes Project

How common each genotype is

How common each genotype is in the 1000 Genomes Project, by region
RegionTTLess oftenCTMiddleCCMore often
All regions2,504 people64%31%5%
Africa661 people65%32%3%
The Americas347 people73%23%3%
East Asia504 people74%25%1%
Europe503 people67%30%4%
South Asia489 people43%45%12%

Among the 2,504 people of the 1000 Genomes Project, in five world regions. These percentages describe groups of people, never anyone’s chance of having a trait.

Ancient genomes

Through time

How often the studied letter was read in ancient people, era by era, in the region chosen.

Region
Through time: Europe
Before farmingbefore 6500 BC4%1 of 27 copies read
First farmers6500 to 3000 BC9%20 of 219 copies read
Bronze Age3000 to 1200 BC17%24 of 140 copies read
Iron Age and Antiquity1200 BC to AD 60019%47 of 246 copies read
Middle AgesAD 600 to 150022%58 of 269 copies read
Today1000 Genomes19%187 of 1,006 copies

Neanderthal and Denisovan genomes

Altai Neanderthal
Not read
Vindija Neanderthal
Not read
Chagyrskaya Neanderthal
No copies
Denisovan
Not read
For most ancient people only one of their two copies can be read, so these counts are copies read, not people. Close relatives, repeated samples and samples the archive marks as unreliable are left out. Damage in old DNA can fake this letter, so it is counted only from samples treated to remove that damage and from high-quality genomes. Ancient genomes from the Allen Ancient DNA Resource (AADR v66): 15,136 people.
rs13284688

The marker

Gene or region
TLE4 / PSAT1 region
Marker
rs13284688
Location
Chromosome 9 · GRCh37 81,727,018 · GRCh38 79,112,102
Letters studied
C and T, with C as the studied allele

A DNA Traits report reads this marker in your raw DNA file and shows which of the three genotypes is yours, with how common it is. It counts the copies of the studied allele; it does not measure the trait itself.

Marker
TLE4 / PSAT1 region · rs13284688
Location
Chromosome 9 · GRCh37 81,727,018 · GRCh38 79,112,102
Studied allele
C
Published statistic
Meta-analysis beta 0.0148 per C (SE 0.0011), P 1.33e-43, n 993,966; 23andMe replication 0.0144 (SE 0.0015), P 1.85e-21, n 541,333; UK Biobank 0.0151 (SE 0.0015), P 1.7e-23, n 452,633; C frequency 0.21 (Supplementary Data 1 and 2) (Supplementary Data 2)
1000 Genomes Project phase 3, people with 0, 1 and 2 copies
All regions 1602 / 783 / 119 · Africa 428 / 211 / 22 · The Americas 255 / 80 / 12 · East Asia 372 / 125 / 7 · Europe 335 / 149 / 19 · South Asia 212 / 218 / 59
See this card in the sample report
Limits

What it cannot tell you

Napping was self-reported on a three-step scale, and the average difference per copy is a small fraction of one step.

Genetic determinants of daytime napping and effects on cardiometabolic health (Dashti et al., 2021)
The same topic

More in Sleep & rhythms

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