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DNA Traits · Sleep & rhythms

Sleep efficiency association

The share of time in bed that is spent asleep, measured with a wrist tracker.

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Evidence · Not yet replicated

What the research found

In the cited research, the G allele at rs113851554 was associated with higher accelerometer-estimated sleep efficiency in the studied cohorts.

TT
Lower average
GT
Middle
GG
Higher average
Slight effect

What the study found

In the study, each copy went with higher sleep efficiency from a wrist tracker, the share of the night's sleep window spent asleep on average.

UK Biobank adults of European ancestry with seven-day wrist accelerometry · Table 3 (beta, SE, P, effect allele frequency); Methods, association testing paragraph (results reported on the inverse-normal scale)
Evidence
Genome-wide association using seven-day wrist accelerometry
Who was studied
European-ancestry UK Biobank adults with seven-day wrist accelerometer measurements
1000 Genomes Project

How common each genotype is

How common each genotype is in the 1000 Genomes Project, by region
RegionTTLower averageGTMiddleGGHigher average
All regions2,504 people<1%4%96%
Africa661 peopleNot seen<1%>99%
The Americas347 peopleNot seen4%96%
East Asia504 peopleNot seenNot seenAll
Europe503 people<1%10%90%
South Asia489 peopleNot seen6%94%

Among the 2,504 people of the 1000 Genomes Project, in five world regions. These percentages describe groups of people, never anyone’s chance of having a trait.

Ancient genomes

Through time

How often the studied letter was read in ancient people, era by era, in the region chosen.

Region
Through time: Europe
Before farmingbefore 6500 BC100%34 of 34 copies read
First farmers6500 to 3000 BC99%209 of 212 copies read
Bronze Age3000 to 1200 BC98%160 of 164 copies read
Iron Age and Antiquity1200 BC to AD 60095%449 of 475 copies read
Middle AgesAD 600 to 150096%439 of 457 copies read
Today1000 Genomes95%953 of 1,006 copies

Neanderthal and Denisovan genomes

Altai Neanderthal
Not read
Vindija Neanderthal
Not read
Chagyrskaya Neanderthal
2 copies
Denisovan
Not read
For most ancient people only one of their two copies can be read, so these counts are copies read, not people. Close relatives, repeated samples and samples the archive marks as unreliable are left out. Ancient genomes from the Allen Ancient DNA Resource (AADR v66): 15,136 people.
rs113851554

The marker

Gene or region
MEIS1 region
Marker
rs113851554
Location
Chromosome 2 · GRCh37 66,750,564 · GRCh38 66,523,432
Letters studied
G and T, with G as the studied allele

A DNA Traits report reads this marker in your raw DNA file and shows which of the three genotypes is yours, with how common it is. It counts the copies of the studied allele; it does not measure the trait itself.

Marker
MEIS1 region · rs113851554
Location
Chromosome 2 · GRCh37 66,750,564 · GRCh38 66,523,432
Studied allele
G
Published statistic
beta 0.101 SD per G allele (SE 0.011), P 5e-22; G frequency 0.943; SD units of the inverse-normal transformed trait; 0.1 SD per copy (Table 3 (beta, SE, P, effect allele frequency); Methods, association testing paragraph (results reported on the inverse-normal scale))
1000 Genomes Project phase 3, people with 0, 1 and 2 copies
All regions 2 / 97 / 2405 · Africa 0 / 6 / 655 · The Americas 0 / 15 / 332 · East Asia 0 / 0 / 504 · Europe 2 / 49 / 452 · South Asia 0 / 27 / 462
See this card in the sample report
Limits

What it cannot tell you

Sleep efficiency was estimated from wrist movement, rather than measured with clinical sleep recordings. Periodic limb movements associated with restless legs syndrome may affect the wrist estimate, so this signal may not reflect sleep efficiency alone. This marker does not estimate your sleep efficiency, is not a test for a sleep disorder and does not measure recovery. It shares a marker with the insomnia-symptom card; these are two study outcomes, not independent genetic findings. Only the studied G/T allele pair is interpreted.

Genetic studies of accelerometer-based sleep measures yield new insights into human sleep behaviour (Jones et al., 2019)
The same topic

More in Sleep & rhythms

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